STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1222PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5716 major facilitator transporter. (436 aa)    
Predicted Functional Partners:
Xcel_2239
PFAM: major facilitator superfamily MFS_1; KEGG: kpn:KPN_01621 putative MFS-type transporter YdeE.
  
     0.606
Xcel_2699
KEGG: dol:Dole_1207 hypothetical protein.
  
    0.573
Xcel_1223
PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_0832 acetyltransferase.
       0.568
Xcel_1221
Hypothetical protein.
       0.517
Xcel_0411
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0905 L-arabinose transport system (sugar-binding protein).
  
     0.516
Xcel_1433
PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: sus:Acid_2816 glycoside hydrolase family protein.
 
     0.500
Xcel_2222
KEGG: xac:XAC4301 hypothetical protein.
 
     0.471
Xcel_3197
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1981 LuxR superfamily regulatory protein.
  
     0.426
Xcel_3198
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bac:BamMC406_3145 AraC family transcriptional regulator.
 
   
 0.414
Xcel_3196
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gox:GOX1022 transcriptional regulator.
 
   
 0.402
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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