STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1224TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: xop:PXO_03586 HipA. (480 aa)    
Predicted Functional Partners:
Xcel_1225
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: xop:PXO_03585 transcriptional regulator.
   
 
 0.908
Xcel_1757
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: xac:XAC0188 transcriptional regulator.
   
 
 0.621
Xcel_2883
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ccs:CCNA_00479 transcriptional regulatory protein.
   
 
 0.621
Xcel_2109
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bxe:Bxe_B2769 XRE family transcriptional regulator.
   
 
 0.602
Xcel_3240
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sal:Sala_1613 XRE family transcriptional regulator.
   
 
 0.602
Xcel_1226
PFAM: branched-chain amino acid transport; KEGG: mxa:MXAN_5157 hypothetical protein.
       0.524
Xcel_1227
PFAM: AzlC family protein; KEGG: mxa:MXAN_5158 AzlC family protein.
       0.524
Xcel_1527
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; DNA polymerase beta domain protein region; SMART: helix-turn-helix domain protein; KEGG: xfn:XfasM23_1812 DNA polymerase beta subunit.
 
   0.507
Xcel_1228
PFAM: Aldehyde Dehydrogenase; KEGG: smd:Smed_5259 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.488
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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