STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1226PFAM: branched-chain amino acid transport; KEGG: mxa:MXAN_5157 hypothetical protein. (106 aa)    
Predicted Functional Partners:
Xcel_1227
PFAM: AzlC family protein; KEGG: mxa:MXAN_5158 AzlC family protein.
 
  
 0.987
Xcel_1228
PFAM: Aldehyde Dehydrogenase; KEGG: smd:Smed_5259 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.714
Xcel_1091
KEGG: hha:Hhal_1735 putative ABC transporter.
  
     0.540
Xcel_1086
Hypothetical protein; KEGG: hha:Hhal_1736 putative ABC transporter.
  
     0.526
Xcel_1224
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: xop:PXO_03586 HipA.
       0.524
Xcel_1225
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: xop:PXO_03585 transcriptional regulator.
       0.524
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.516
Xcel_1090
Hypothetical protein; KEGG: hha:Hhal_1736 putative ABC transporter.
  
     0.507
rnj
Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.467
Xcel_1087
KEGG: hha:Hhal_1735 putative ABC transporter.
  
     0.450
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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