STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1228PFAM: Aldehyde Dehydrogenase; KEGG: smd:Smed_5259 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (489 aa)    
Predicted Functional Partners:
Xcel_0166
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dno:DNO_1026 fumarate reductase flavoprotein subunit.
   
 0.928
Xcel_0894
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: ret:RHE_CH01730 putative oxidoreductase protein.
   
 0.928
Xcel_0988
KEGG: sfu:Sfum_2104 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
   
 0.928
Xcel_2214
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: aba:Acid345_1384 succinate dehydrogenase flavoprotein subunit.
   
 0.928
Xcel_0690
PFAM: Aldehyde Dehydrogenase; KEGG: sus:Acid_1786 succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.918
Xcel_0167
KEGG: hip:CGSHiEE_07890 fumarate reductase iron- sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.913
Xcel_0987
KEGG: ftm:FTM_0139 succinate dehydrogenase iron- sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.913
Xcel_2215
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: aba:Acid345_1385 fumarate reductase iron- sulfur subunit.
   
 
 0.913
Xcel_0990
TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: har:HEAR3329 putative succinate dehydrogenase/fumarate reductase cytochrome b-556 subunit.
   
 
  0.908
Xcel_0989
KEGG: eta:ETA_23070 succinate dehydrogenase hydrophobic membrane anchor protein.
   
 
 0.907
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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