STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1232KEGG: afw:Anae109_2664 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Xcel_1231
PFAM: regulatory protein TetR; KEGG: pla:Plav_2655 TetR family transcriptional regulator.
 
     0.728
Xcel_2577
KEGG: mes:Meso_0486 hypothetical protein.
  
     0.526
Xcel_0068
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: xcc:XCC3278 flavin monoamine oxidase-related protein.
  
     0.477
Xcel_3276
KEGG: mrd:Mrad2831_1188 hypothetical protein.
  
     0.445
Xcel_3215
KEGG: noc:Noc_1844 hypothetical protein.
  
     0.438
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.