STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1249Hypothetical protein. (169 aa)    
Predicted Functional Partners:
Xcel_1250
Hypothetical protein.
 
    
0.813
Xcel_1426
Hypothetical protein.
  
     0.641
Xcel_0102
PFAM: Excalibur domain protein; KEGG: xau:Xaut_0293 translation initiation factor IF-2.
  
     0.590
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.579
Xcel_1251
Hypothetical protein; KEGG: dsh:Dshi_3403 AMP-dependent synthetase and ligase.
       0.565
Xcel_1103
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
     0.564
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.535
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.533
Xcel_2227
PFAM: metallophosphoesterase; KEGG: serine/threonine-protein kinase C.
  
     0.517
Xcel_2493
PFAM: DoxX family protein; KEGG: oca:OCAR_6332 DoxX.
  
     0.496
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.