STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1250Hypothetical protein. (229 aa)    
Predicted Functional Partners:
Xcel_1249
Hypothetical protein.
 
    
0.813
Xcel_1426
Hypothetical protein.
  
     0.683
Xcel_2227
PFAM: metallophosphoesterase; KEGG: serine/threonine-protein kinase C.
  
     0.650
Xcel_1103
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
     0.629
Xcel_1251
Hypothetical protein; KEGG: dsh:Dshi_3403 AMP-dependent synthetase and ligase.
       0.565
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.527
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.526
Xcel_3140
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; KEGG: gme:Gmet_2818 putative PAS/PAC sensor protein.
  
     0.479
Xcel_2942
Hypothetical protein; KEGG: mgm:Mmc1_2179 putative outer membrane adhesin like proteiin.
  
     0.463
Xcel_0686
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pna:Pnap_1448 putative transcriptional regulator, MerR family.
  
     0.454
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.