STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1266PFAM: protein of unknown function DUF75. (312 aa)    
Predicted Functional Partners:
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.568
Xcel_0353
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mlo:mlr4723 hypothetical protein.
   
    0.513
Xcel_1263
PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: gbm:Gbem_0731 response regulator receiver modulated serine phosphatase.
 
     0.513
Xcel_1265
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bph:Bphy_1144 response regulator receiver protein.
       0.513
Xcel_3004
KEGG: azc:AZC_0404 hypothetical protein.
   
    0.513
Xcel_1267
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bbr:BB5013 putative cold shock-like protein.
       0.495
Xcel_0005
PFAM: protein of unknown function DUF721; KEGG: protein of unknown function DUF721.
  
     0.471
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.470
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.445
Xcel_0443
PFAM: Phosphoglycerate mutase; KEGG: mno:Mnod_1087 phosphoglycerate mutase.
  
     0.439
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.