STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1272PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: sus:Acid_0334 transglutaminase domain- containing protein. (771 aa)    
Predicted Functional Partners:
Xcel_1273
PFAM: protein of unknown function DUF58; KEGG: mmr:Mmar10_2677 hypothetical protein.
 
    0.960
Xcel_1274
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bca:BCE_2205 hypothetical protein.
 
   
 0.928
Xcel_0485
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bce:BC2117 MoxR protein.
 
   
 0.655
Xcel_1787
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_0187 ATPase.
 
   
 0.621
Xcel_1277
Hypothetical protein.
 
     0.558
Xcel_1000
KEGG: hypothetical protein.
  
     0.535
mraZ
TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: bha:BH2576 cell division protein MraZ; Belongs to the MraZ family.
       0.511
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.507
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
 
     0.473
Xcel_0486
PFAM: protein of unknown function DUF58; KEGG: sus:Acid_7892 hypothetical protein.
 
    0.467
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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