STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1273PFAM: protein of unknown function DUF58; KEGG: mmr:Mmar10_2677 hypothetical protein. (432 aa)    
Predicted Functional Partners:
Xcel_1272
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: sus:Acid_0334 transglutaminase domain- containing protein.
 
    0.960
Xcel_1274
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bca:BCE_2205 hypothetical protein.
 
  
 0.847
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.720
Xcel_0171
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
     0.685
Xcel_0736
KEGG: bch:Bcen2424_6766 PE-PGRS family protein.
  
    0.649
Xcel_1277
Hypothetical protein.
 
     0.633
Xcel_0487
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: cti:RALTA_B0173 putative protease, transglutaminase motif.
 
    0.589
Xcel_0325
KEGG: ank:AnaeK_3451 hypothetical protein.
  
     0.561
Xcel_2032
Hypothetical protein; KEGG: ank:AnaeK_2647 putative CheA signal transduction histidine kinase.
  
     0.553
Xcel_0488
PFAM: RDD domain containing protein; Forkhead- associated protein; KEGG: predicted gene, 100042292.
 
     0.537
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.