STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1297PFAM: NUDIX hydrolase; KEGG: bra:BRADO2098 putative NUDIX hydrolase family protein; putative ADP-ribose pyrophosphatase. (182 aa)    
Predicted Functional Partners:
Xcel_1296
KEGG: pca:Pcar_1222 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.
     
 0.781
Xcel_2833
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
      0.751
Xcel_1298
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
       0.597
Xcel_1295
PFAM: GCN5-related N-acetyltransferase; KEGG: pde:Pden_2843 GCN5-related N- acetyltransferase.
       0.543
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
    0.536
Xcel_1294
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.535
Xcel_1292
Transcriptional regulator, TraR/DksA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: pap:PSPA7_6338 RNA polymerase-binding protein DksA.
       0.447
Xcel_3019
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: xau:Xaut_1595 ECF subfamily RNA polymerase sigma-24 factor.
  
    0.432
Xcel_2435
KEGG: gdi:GDI0760 hypothetical protein.
  
     0.428
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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