STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1304KEGG: rce:RC1_1069 hypothetical protein. (285 aa)    
Predicted Functional Partners:
Xcel_1305
KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase.
       0.649
Xcel_2583
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: waaV; lipooligosaccharide biosynthesis glycosyltransferase.
   
 
 0.625
Xcel_2767
PFAM: PfkB domain protein; KEGG: gbm:Gbem_3234 1-phosphofructokinase.
   
    0.609
Xcel_0220
PFAM: glycosyl transferase group 1; KEGG: bha:BH2688 alpha-D-mannose-alpha(1- 6)phosphatidyl myo-inositol monomannoside transferase.
   
 
 0.599
Xcel_0373
PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_1523 glycosyltransferase.
   
 
 0.599
Xcel_1421
TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3629 glycosyl transferase, group 1.
   
 
 0.599
Xcel_1660
PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_4290 phosphatidylinositol alpha- mannosyltransferase.
   
 
 0.599
Xcel_2461
PFAM: glycosyl transferase group 1; KEGG: tbd:Tbd_0302 glycosyltransferase.
   
 
 0.599
Xcel_2553
KEGG: rru:Rru_A2121 hypothetical protein.
   
 
 0.599
Xcel_2564
PFAM: polysaccharide biosynthesis protein; KEGG: sdy:SDY_2208 putative O-antigen transporter.
   
 
 0.599
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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