STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1354PFAM: ABC-2 type transporter; KEGG: scl:sce5572 putative integral membrane transport protein. (257 aa)    
Predicted Functional Partners:
Xcel_1355
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rce:RC1_1815 ABC transporter, ATP-binding protein, putative.
 
  
 0.956
Xcel_1353
PFAM: cytochrome oxidase assembly; KEGG: aeh:Mlg_0300 cytochrome oxidase assembly.
   
 0.947
Xcel_1351
PFAM: ABC-2 type transporter; KEGG: rsq:Rsph17025_3253 ABC transporter related.
 
  
  0.699
Xcel_1352
KEGG: ade:Adeh_3915 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.675
Xcel_0058
PFAM: ABC-2 type transporter; KEGG: bcr:BCAH187_A3467 ABC transporter, efflux permease protein.
 
  
  0.633
Xcel_3320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6967 ABC transporter related.
 
  
 0.614
Xcel_2014
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.607
Xcel_1356
Putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; regulatory protein ArsR; KEGG: vvy:VV3021 transcriptional regulator.
       0.595
Xcel_1357
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcr:BCAH187_A5119 FeS assembly protein SufB.
       0.595
Xcel_1358
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: acp:A2cp1_0895 FeS assembly protein SufD.
       0.595
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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