STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1362TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein. (155 aa)    
Predicted Functional Partners:
Xcel_1361
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.996
Xcel_1363
PFAM: protein of unknown function DUF59; KEGG: eli:ELI_12745 metal-sulfur cluster biosynthetic enzyme.
 
    0.996
Xcel_1360
KEGG: bcr:BCAH187_A5123 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.991
Xcel_3118
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: scl:sce1210 hypothetical protein.
 
 
 0.984
Xcel_0347
PFAM: aminotransferase class V; KEGG: gbm:Gbem_1583 aminotransferase class V.
  
 0.982
Xcel_2409
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvm:DvMF_2659 cysteine desulfurase NifS.
  
 0.982
Xcel_1358
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: acp:A2cp1_0895 FeS assembly protein SufD.
 
  
 0.980
Xcel_1357
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcr:BCAH187_A5119 FeS assembly protein SufB.
 
  
 0.974
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.936
Xcel_1356
Putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; regulatory protein ArsR; KEGG: vvy:VV3021 transcriptional regulator.
  
  
 0.787
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.