STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1393PFAM: periplasmic binding protein; KEGG: oan:Oant_3797 periplasmic binding protein. (340 aa)    
Predicted Functional Partners:
Xcel_1394
PFAM: transport system permease protein; KEGG: atc:AGR_C_4489 ferrichrome ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.989
Xcel_1395
PFAM: transport system permease protein; KEGG: bov:BOV_A0634 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.989
Xcel_1396
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_0297 ABC transporter related.
 
  
 0.989
Xcel_1392
PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: reu:Reut_B4272 siderophore-interacting protein.
 
  
 0.701
Xcel_1448
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_3149 ABC transporter related.
 
  
 0.488
Xcel_2174
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit.
 
  
 0.473
Xcel_0237
PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: sml:Smlt3577 putative siderophore interacting FAD binding protein.
 
  
 0.468
Xcel_1391
PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce6328 hypothetical protein.
       0.434
Xcel_3056
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter related; K02013 iron complex transport system ATP-binding protein.
 
  
 0.408
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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