STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1402PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_2128 oxidoreductase, short chain dehydrogenase/reductase family. (286 aa)    
Predicted Functional Partners:
Xcel_1096
KEGG: sml:Smlt0110 putative viral-like DNA topoisomerase.
  
 
   0.705
Xcel_1403
PFAM: ANTAR domain protein; KEGG: met:M446_0827 signal transduction histidine kinase.
       0.705
Xcel_2138
Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.678
Xcel_0426
PFAM: sulfatase; KEGG: pzu:PHZ_c0420 arylsulfatase.
   
 
 0.595
Xcel_2767
PFAM: PfkB domain protein; KEGG: gbm:Gbem_3234 1-phosphofructokinase.
  
  
 0.577
Xcel_2768
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: mxa:MXAN_1554 iron-sulfur cluster-binding protein, Rieske family.
 
 
 0.577
Xcel_3244
KEGG: ank:AnaeK_2924 hypothetical protein.
   
 
 0.575
Xcel_1404
KEGG: ade:Adeh_3507 hypothetical protein.
 
     0.551
Xcel_0099
Hypothetical protein.
    
 0.531
Xcel_1400
PFAM: bifunctional deaminase-reductase domain protein; KEGG: ank:AnaeK_4011 bifunctional deaminase- reductase domain protein.
  
    0.528
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.