STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1403PFAM: ANTAR domain protein; KEGG: met:M446_0827 signal transduction histidine kinase. (235 aa)    
Predicted Functional Partners:
Xcel_0104
PFAM: Extracellular ligand-binding receptor; KEGG: csa:Csal_1418 extracellular ligand-binding receptor.
  
 
 0.776
Xcel_1402
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_2128 oxidoreductase, short chain dehydrogenase/reductase family.
       0.705
Xcel_1401
Putative PAS/PAC sensor protein; PFAM: ANTAR domain protein; PAS fold-3 domain protein; KEGG: met:M446_3030 multi-sensor hybrid histidine kinase.
 
    
0.622
Xcel_2839
PFAM: OsmC family protein; KEGG: sme:SM_b21303 hypothetical protein.
  
     0.610
Xcel_1986
KEGG: bba:Bd1307 hypothetical protein.
  
     0.604
Xcel_1981
PFAM: RDD domain containing protein; KEGG: aav:Aave_4623 RDD domain containing protein.
  
    0.595
Xcel_1987
Hypothetical protein.
  
     0.569
Xcel_1400
PFAM: bifunctional deaminase-reductase domain protein; KEGG: ank:AnaeK_4011 bifunctional deaminase- reductase domain protein.
 
     0.553
Xcel_0227
PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator.
  
     0.545
Xcel_2041
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: met:M446_5885 adenylate/guanylate cyclase.
  
     0.533
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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