STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1406Hypothetical protein. (47 aa)    
Predicted Functional Partners:
Xcel_3059
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: noc:Noc_0057 hypothetical protein.
  
     0.542
Xcel_1404
KEGG: ade:Adeh_3507 hypothetical protein.
       0.530
Xcel_1405
Hypothetical protein.
       0.530
Xcel_1407
Hypothetical protein.
       0.519
Xcel_3081
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: SNF2 superfamily protein.
  
     0.513
Xcel_1143
PFAM: DSBA oxidoreductase.
  
     0.499
Xcel_1636
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase.
  
     0.488
Xcel_0084
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; PT repeat-containing protein; KEGG: similar to microtubule-associated protein 6.
  
     0.455
Xcel_2425
KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family.
  
     0.449
Xcel_2482
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: hypothetical protein.
  
     0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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