STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1423PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: acp:A2cp1_3829 response regulator receiver protein. (237 aa)    
Predicted Functional Partners:
Xcel_1636
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase.
  
  
  0.916
Xcel_1425
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bmj:BMULJ_00037 signal transduction histidine kinase.
 
     0.906
Xcel_1721
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bcz:BCZK2266 D-alanyl-D-alanine carboxypeptidase.
     
  0.900
Xcel_3081
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: SNF2 superfamily protein.
     
  0.900
Xcel_1424
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sus:Acid_5477 two component transcriptional regulator.
 
     0.876
Xcel_1422
PFAM: VanZ family protein; KEGG: azo:azo0364 hypothetical protein.
 
     0.822
Xcel_3129
Hypothetical protein; KEGG: GG18790 gene product from transcript GG18790- RA.
  
     0.514
Xcel_2194
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rlt:Rleg2_5436 transcriptional regulator, LuxR family.
  
     0.480
Xcel_3338
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; protein of unknown function UPF0074; KEGG: scl:sce5223 DeoR family transcriptional regulator.
  
     0.463
Xcel_3277
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: rlt:Rleg2_5436 transcriptional regulator, LuxR family.
  
     0.450
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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