STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1427PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3281 ABC transporter related. (271 aa)    
Predicted Functional Partners:
Xcel_1511
KEGG: acp:A2cp1_3395 hypothetical protein.
      0.668
Xcel_1426
Hypothetical protein.
       0.613
Xcel_1428
PFAM: protein of unknown function DUF107; KEGG: mxa:MXAN_3983 NfeD family protein.
       0.597
Xcel_1924
Hypothetical protein.
  
     0.524
Xcel_1429
PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfu:Sfum_2310 band 7 protein.
       0.508
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.481
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.426
Xcel_1741
SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator.
  
     0.402
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.