STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1429PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfu:Sfum_2310 band 7 protein. (394 aa)    
Predicted Functional Partners:
Xcel_1428
PFAM: protein of unknown function DUF107; KEGG: mxa:MXAN_3983 NfeD family protein.
 
  
 0.944
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.940
arc
AAA ATPase central domain protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
   
 
 0.715
Xcel_0012
PFAM: Rhomboid family protein; KEGG: aba:Acid345_1881 rhomboid-like protein.
   
 0.673
Xcel_1203
PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_1267 hypothetical protein.
  
    0.607
Xcel_1975
KEGG: sal:Sala_0218 hypothetical protein.
  
  
 0.601
Xcel_1218
PFAM: peptidase M16 domain protein; KEGG: dal:Dalk_4744 peptidase M16 domain protein; Belongs to the peptidase M16 family.
  
 0.590
Xcel_2226
PFAM: iron dependent repressor; regulatory protein GntR HTH; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor.
   
    0.589
Xcel_1431
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter.
   
   0.541
Xcel_1432
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter.
   
   0.541
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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