STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1430PFAM: regulatory protein TetR; KEGG: scl:sce5643 TetR family transcriptional regulator. (236 aa)    
Predicted Functional Partners:
Xcel_1431
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter.
       0.779
Xcel_1432
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter.
       0.774
Xcel_1433
PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: sus:Acid_2816 glycoside hydrolase family protein.
       0.543
Xcel_0615
Hypothetical protein.
  
     0.523
Xcel_1429
PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfu:Sfum_2310 band 7 protein.
  
    0.489
Xcel_2032
Hypothetical protein; KEGG: ank:AnaeK_2647 putative CheA signal transduction histidine kinase.
  
     0.485
Xcel_2776
PFAM: Patatin; KEGG: bpm:BURPS1710b_1675 patatin family phospholipase.
  
     0.475
Xcel_2210
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: scl:sce8316 competence protein.
  
     0.458
Xcel_0378
PFAM: PfkB domain protein; KEGG: bvi:Bcep1808_1562 ribokinase.
  
     0.438
Xcel_0322
PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_0869 major facilitator transporter.
  
     0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.