STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1437PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: sml:Smlt3577 putative siderophore interacting FAD binding protein. (315 aa)    
Predicted Functional Partners:
Xcel_1448
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_3149 ABC transporter related.
  
 0.744
Xcel_2174
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit.
  
 0.727
Xcel_1435
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmr:Mmar10_2206 AraC family transcriptional regulator.
  
    0.574
Xcel_1436
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cak:Caul_3553 tRNA/rRNA methyltransferase (SpoU).
       0.561
Xcel_3056
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter related; K02013 iron complex transport system ATP-binding protein.
 
  
 0.558
Xcel_2175
PFAM: periplasmic binding protein; KEGG: rsq:Rsph17025_3331 transport system permease protein.
 
  
 0.500
Xcel_1396
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_0297 ABC transporter related.
  
 0.475
Xcel_0944
KEGG: afw:Anae109_2050 hypothetical protein.
  
     0.416
Xcel_1434
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rde:RD1_1136 hypothetical protein.
       0.403
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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