STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1445PFAM: membrane-bound metal-dependent hydrolase; KEGG: gbe:GbCGDNIH1_1245 predicted membrane-bound metal-dependent hydrolase. (279 aa)    
Predicted Functional Partners:
Xcel_0903
PFAM: Domain of unknown function DUF1918.
 
     0.684
Xcel_0227
PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator.
 
     0.664
Xcel_0111
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll2156 hypothetical protein.
  
     0.646
Xcel_0353
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mlo:mlr4723 hypothetical protein.
  
     0.607
Xcel_0568
PFAM: C-5 cytosine-specific DNA methylase; KEGG: hch:HCH_02855 site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
    0.564
Xcel_1446
KEGG: mlo:mlr3114 hypothetical protein.
       0.559
Xcel_1443
Hypothetical protein.
       0.550
Xcel_1444
Hypothetical protein.
       0.550
Xcel_2251
KEGG: hypothetical protein.
  
     0.494
Xcel_1157
Hypothetical protein.
  
     0.468
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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