STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1471KEGG: ccs:CCNA_00319 acetyltransferase, GNAT family. (204 aa)    
Predicted Functional Partners:
Xcel_1802
KEGG: csa:Csal_1054 L-lysine 6-monooxygenase (NADPH).
 
  
 0.578
Xcel_1470
Hypothetical protein.
       0.550
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.483
Xcel_2812
PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_0758 GCN5-related N- acetyltransferase.
  
   
 0.441
Xcel_1472
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pag:PLES_39881 putative ATP-binding component of ABC transporter.
       0.429
Xcel_1987
Hypothetical protein.
  
     0.424
Xcel_1801
PFAM: IucA/IucC family protein; KEGG: csa:Csal_1053 IucA/IucC.
 
  
 0.419
Xcel_0298
KEGG: hypothetical protein.
  
     0.406
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.