STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1480PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Xcel_1481
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpa:RPA4337 HAD-superfamily hydrolase subfamily IA, variant 3.
       0.662
Xcel_0599
KEGG: ade:Adeh_4038 MaoC-like dehydratase; Belongs to the UPF0336 family.
  
     0.587
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.558
Xcel_0600
PFAM: MaoC domain protein dehydratase; KEGG: mxa:MXAN_4672 MaoC domain protein.
  
     0.553
Xcel_1353
PFAM: cytochrome oxidase assembly; KEGG: aeh:Mlg_0300 cytochrome oxidase assembly.
  
     0.527
Xcel_0353
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mlo:mlr4723 hypothetical protein.
   
    0.513
Xcel_3004
KEGG: azc:AZC_0404 hypothetical protein.
   
    0.513
Xcel_1108
PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2545 5,10- methylenetetrahydromethanopterin reductase.
  
     0.479
Xcel_2014
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.424
Xcel_1739
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rsh:Rsph17029_4137 MerR family transcriptional regulator.
  
     0.421
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.