STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1510PFAM: protein of unknown function DUF368; KEGG: bce:BC5158 integral membrane protein. (301 aa)    
Predicted Functional Partners:
Xcel_1511
KEGG: acp:A2cp1_3395 hypothetical protein.
       0.773
Xcel_0465
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: reu:Reut_B3642 multi anti extrusion protein MatE.
  
     0.707
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.682
Xcel_3311
PFAM: chloramphenicol acetyltransferase; KEGG: sew:SeSA_B0098 chloramphenicol acetyltransferase 2.
  
     0.504
Xcel_1512
PFAM: protein of unknown function DUF606; KEGG: pmr:PMI1526 hypothetical protein.
       0.479
uppP
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
  
 0.472
Xcel_0146
KEGG: bha:BH1004 hypothetical protein.
  
     0.429
Xcel_0145
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter ATP-binding protein.
  
     0.403
Xcel_1508
PFAM: thioesterase superfamily protein; KEGG: pin:Ping_1451 phenylacetic acid degradation- related protein.
       0.403
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.