STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1516PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dol:Dole_3066 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Xcel_1298
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.689
Xcel_0756
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: aba:Acid345_1451 3-demethylubiquinone-9 3- methyltransferase.
  
    0.604
Xcel_1687
Hypothetical protein; KEGG: LAMB1; laminin, beta 1; K05636 laminin, beta 1.
   
    0.541
Xcel_0164
KEGG: mpt:Mpe_A2206 hypothetical protein.
  
    0.532
Xcel_0165
Acetyltransferase-like protein; KEGG: psa:PST_4142 predicted acetyltransferase.
  
    0.532
Xcel_2052
PFAM: CsbD family protein; KEGG: hypothetical protein.
   
    0.529
Xcel_0288
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbe:GbCGDNIH1_1597 quinate/shikimate dehydrogenase.
   
    0.499
Xcel_2089
PFAM: NAD-dependent epimerase/dehydratase; KEGG: xcv:XCV0076 hypothetical protein.
   
    0.499
Xcel_1515
PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: dal:Dalk_0933 ribosomal protein S1.
  
    0.489
Xcel_2226
PFAM: iron dependent repressor; regulatory protein GntR HTH; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor.
   
    0.463
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.