STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-5PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (138 aa)    
Predicted Functional Partners:
Xcel_2918
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
   0.819
Xcel_0153
KEGG: noc:Noc_0441 putative plasmid protein.
 
 
 0.777
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.775
Xcel_1766
TIGRFAM: prevent-host-death family protein; KEGG: rpb:RPB_0354 prevent-host-death protein.
   
 
 0.686
Xcel_1527
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; DNA polymerase beta domain protein region; SMART: helix-turn-helix domain protein; KEGG: xfn:XfasM23_1812 DNA polymerase beta subunit.
 
     0.635
Xcel_0075
Hypothetical protein; KEGG: bbt:BBta_7720 plasmid stability protein.
   
 
 0.572
Xcel_1528
PFAM: protein of unknown function DUF86; KEGG: aba:Acid345_1969 protein of unknown function DUF86.
     
 0.549
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.470
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.444
Xcel_1530
Hypothetical protein.
       0.444
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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