STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1566PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2339 putative major facilitator superfamily protein. (414 aa)    
Predicted Functional Partners:
Xcel_1567
PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase protein.
       0.668
der
Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.
       0.565
Xcel_1564
PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: gsu:GSU1403 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
       0.507
Xcel_0744
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpt:Bpet3362 HlyB/MsbA family ABC transporter.
  
     0.420
Xcel_2879
PFAM: ATPase; KEGG: gme:Gmet_2667 DUF234 DEXX-box ATPase.
  
     0.411
Xcel_2675
PFAM: major facilitator superfamily MFS_1; KEGG: bcz:BCZK5068 multidrug resistance protein; permease.
  
     0.407
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.