STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1569PFAM: integrase family protein; KEGG: bcy:Bcer98_2627 phage integrase family protein; Belongs to the 'phage' integrase family. (422 aa)    
Predicted Functional Partners:
Xcel_1568
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; regulatory protein MerR; KEGG: eba:ebB19 hypothetical protein.
 
     0.948
Xcel_0794
Phage transcriptional regulator, AlpA; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; Prophage CP4-57 regulatory; KEGG: cak:Caul_2014 hypothetical protein.
 
     0.782
Xcel_0597
PFAM: integrase family protein; KEGG: met:M446_3878 integrase family protein; Belongs to the 'phage' integrase family.
  
     0.662
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.470
Xcel_0844
PFAM: SAF domain protein; KEGG: xop:PXO_01713 periplasmic protease.
  
     0.469
Xcel_2073
PFAM: integrase family protein; KEGG: met:M446_3878 integrase family protein; Belongs to the 'phage' integrase family.
  
     0.464
Xcel_0968
PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP- glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hha:Hhal_0566 prephenate dehydrogenase.
  
    0.461
Xcel_1305
KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase.
  
  
 0.454
Xcel_1024
PFAM: protein of unknown function DUF159; KEGG: rru:Rru_A3713 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.443
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.443
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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