STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1575KEGG: bxe:Bxe_A1764 putative type IV secretory pathway protein VirD4. (592 aa)    
Predicted Functional Partners:
Xcel_2343
KEGG: bxe:Bxe_A1764 putative type IV secretory pathway protein VirD4.
  
  
 
0.900
Xcel_1571
Hypothetical protein.
 
     0.849
Xcel_0820
Hypothetical protein; KEGG: bch:Bcen2424_0449 TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.840
Xcel_0805
Type IV secretory pathway VirB4 protein-like protein; KEGG: rle:pRL70152 putative crown gall-like type IV secretion system protein.
 
  
 0.818
Xcel_0819
Hypothetical protein.
 
   
 0.811
Xcel_0849
PFAM: TrwC relaxase; SMART: AAA ATPase; KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit.
 
   
 0.794
Xcel_2336
PFAM: TrwC relaxase; KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit.
 
   
 0.794
Xcel_0797
Hypothetical protein.
 
     0.791
Xcel_0826
PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: nse:NSE_0001 ParB family chromosome partitioning protein.
 
   
 0.790
Xcel_0821
Hypothetical protein.
 
     0.789
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.