STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1590PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related. (365 aa)    
Predicted Functional Partners:
Xcel_1588
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein.
 
     0.922
Xcel_1589
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2571 peptide ABC transporter ATPase.
 
   0.901
Xcel_0853
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein.
 
     0.784
Xcel_1583
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein.
 
     0.784
Xcel_3175
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein.
 
     0.784
Xcel_1582
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_4410 ABC transporter related.
 
   0.761
Xcel_0852
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A1579 ABC transporter component.
 
   0.755
Xcel_3197
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1981 LuxR superfamily regulatory protein.
  
     0.751
Xcel_3176
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_1688 lipoprotein-releasing system ATP- binding protein.
 
   0.709
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
 
     0.700
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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