STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1642PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4522 hypothetical protein. (460 aa)    
Predicted Functional Partners:
Xcel_3343
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: tbd:Tbd_2736 ArsR family transcriptional regulator.
 
     0.716
Xcel_2114
PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_2897 sugar ABC transporter periplasmic sugar-binding protein.
  
     0.615
Xcel_1641
PFAM: multicopper oxidase type 3; blue (type 1) copper domain protein; KEGG: bte:BTH_II0944 mulitcopper oxidase domain- containing protein.
  
  
 0.523
Xcel_1640
KEGG: dar:Daro_2383 hypothetical protein.
  
    0.519
Xcel_1639
KEGG: mag:amb1262 hypothetical protein.
       0.509
Xcel_1870
PFAM: aminoglycoside phosphotransferase; KEGG: scl:sce1315 phosphotransferase.
  
     0.507
Xcel_2202
PFAM: protein of unknown function DUF1503.
  
     0.504
Xcel_1763
Hypothetical protein.
  
     0.498
Xcel_1643
KEGG: ade:Adeh_2408 hypothetical protein.
       0.496
panC
Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
       0.496
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.