STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1649PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL0094 GFO/IDH/MocA family oxidoreductase. (388 aa)    
Predicted Functional Partners:
Xcel_1648
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA2140 putative oxidoreductase.
 
     0.929
Xcel_2700
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lch:Lcho_1398 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.754
Xcel_2033
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: psp:PSPPH_3186 Gfo/Idh/MocA family oxidoreductase.
  
     0.697
Xcel_1373
PFAM: oxidoreductase domain protein; KEGG: probable myo-inositol dehydrogenase.
  
     0.649
Xcel_2688
KEGG: glo:Glov_1509 transferase hexapeptide repeat containing protein.
     0.622
Xcel_2588
TIGRFAM: cytidyltransferase-related domain protein; PFAM: oxidoreductase domain protein; cytidylyltransferase; KEGG: bac:BamMC406_1473 oxidoreductase domain- containing protein.
 
    0.538
Xcel_2397
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
 
    0.532
Xcel_1651
PFAM: Uracil-DNA glycosylase superfamily; KEGG: ade:Adeh_3631 uracil-DNA glycosylase superfamily protein.
  
    0.502
Xcel_1650
PFAM: protein of unknown function DUF664.
       0.501
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.479
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.