STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1681PFAM: protein of unknown function DUF1576; KEGG: azc:AZC_2932 major facilitator superfamily permease. (468 aa)    
Predicted Functional Partners:
Xcel_1843
PFAM: Na+/H+ antiporter subunit; KEGG: ech:ECH_0467 putative monovalent cation/H+ antiporter subunit G.
  
     0.657
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.550
Xcel_1841
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: sse:Ssed_3665 NADH-ubiquinone oxidoreductase, chain 4L.
  
     0.539
Xcel_1683
PFAM: GCN5-related N-acetyltransferase; KEGG: hypothetical protein.
       0.535
Xcel_1680
KEGG: rce:RC1_3575 histidyl-tRNA synthetasehisS; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
       0.489
Xcel_1842
KEGG: aeh:Mlg_0741 hypothetical protein.
  
     0.448
Xcel_1684
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cak:Caul_0364 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.444
Xcel_1679
PFAM: beta-lactamase domain protein; KEGG: pca:Pcar_2012 hypothetical protein.
       0.411
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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