STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1700PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_2937 major facilitator superfamily transporter. (472 aa)    
Predicted Functional Partners:
Xcel_1697
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pla:Plav_2904 glycerophosphoryl diester phosphodiesterase.
 
     0.635
Xcel_1699
Lactate 2-monooxygenase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: oxidoreductase.
       0.623
Xcel_1698
KEGG: abb:ABBFA_001367 alpha/beta hydrolase fold family protein.
 
     0.574
Xcel_1701
PFAM: Domain of unknown function DUF1801; KEGG: ccs:CCNA_03530 hypothetical protein.
       0.570
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.423
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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