STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1736PFAM: protein of unknown function DUF1290; KEGG: bha:BH2560 small basic protein. (110 aa)    
Predicted Functional Partners:
Xcel_1735
PFAM: protein of unknown function DUF881; KEGG: bsu:BSU15250 hypothetical protein.
 
  
 0.982
Xcel_1737
PFAM: protein of unknown function DUF881; KEGG: similar to predicted protein.
 
  
 0.975
Xcel_0014
PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein.
 
  
 0.874
Xcel_1734
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gsu:GSU1825 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.819
Xcel_1301
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: glo:Glov_0173 S4 domain protein YaaA.
   
    0.632
Xcel_1738
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_5199 FHA/GGDEF domain protein.
       0.563
Xcel_1739
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rsh:Rsph17029_4137 MerR family transcriptional regulator.
       0.563
Xcel_2727
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bsu:BSU00400 hypothetical protein.
  
     0.495
Xcel_0235
Hypothetical protein.
  
     0.470
Xcel_1740
PFAM: protein of unknown function DUF151; KEGG: aeh:Mlg_1640 hypothetical protein.
       0.465
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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