STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1740PFAM: protein of unknown function DUF151; KEGG: aeh:Mlg_1640 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Xcel_1741
SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator.
     
 0.860
Xcel_1739
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rsh:Rsph17029_4137 MerR family transcriptional regulator.
 
   
 0.791
Xcel_1737
PFAM: protein of unknown function DUF881; KEGG: similar to predicted protein.
     
 0.672
Xcel_1738
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_5199 FHA/GGDEF domain protein.
     
 0.653
arc
AAA ATPase central domain protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
  
    0.645
Xcel_1735
PFAM: protein of unknown function DUF881; KEGG: bsu:BSU15250 hypothetical protein.
     
 0.624
Xcel_1734
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gsu:GSU1825 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.469
Xcel_1736
PFAM: protein of unknown function DUF1290; KEGG: bha:BH2560 small basic protein.
       0.465
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.442
Xcel_1742
Zn-dependent hydrolase of the beta-lactamase fold-like protein; KEGG: dol:Dole_2131 hypothetical protein.
       0.405
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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