STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1744PFAM: integrase family protein; KEGG: ade:Adeh_2695 tyrosine recombinase XerC; Belongs to the 'phage' integrase family. (362 aa)    
Predicted Functional Partners:
Xcel_2508
KEGG: hha:Hhal_0964 competence protein F.
  
    0.760
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.726
Xcel_0968
PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP- glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hha:Hhal_0566 prephenate dehydrogenase.
  
    0.696
Xcel_1024
PFAM: protein of unknown function DUF159; KEGG: rru:Rru_A3713 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.686
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
    0.686
Xcel_2606
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcy:Bcer98_1577 cell divisionFtsK/SpoIIIE.
  
   
 0.655
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.607
Xcel_2184
Hypothetical protein; KEGG: sus:Acid_5430 peptidase S9 prolyl oligopeptidase.
  
     0.549
Xcel_1234
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3893 stage III sporulation protein E.
  
   
 0.545
Xcel_1743
PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: mxa:MXAN_1362 phospholipase family protein.
       0.520
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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