STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1791PFAM: Ferritin Dps family protein; KEGG: pha:PSHAa2456 stress response DNA-binding protein Dps; Belongs to the Dps family. (185 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.869
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.683
Xcel_1543
PFAM: OsmC family protein; KEGG: acr:Acry_2755 OsmC family protein.
  
  
 0.567
Xcel_3017
PFAM: OsmC family protein; KEGG: oan:Oant_0956 OsmC family protein.
  
  
 0.567
Xcel_1789
KEGG: bpy:Bphyt_1648 putative membrane protein, glycine-rich.
       0.562
Xcel_1785
KEGG: Os11g0544100; hypothetical protein.
       0.561
Xcel_1786
Hypothetical protein.
       0.561
Xcel_1787
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_0187 ATPase.
       0.561
Xcel_1788
PFAM: protein of unknown function DUF58; KEGG: mxa:MXAN_2474 hypothetical protein.
       0.561
Xcel_1790
PFAM: GCN5-related N-acetyltransferase; KEGG: pla:Plav_0958 GCN5-related N- acetyltransferase.
       0.561
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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