STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1799Hypothetical protein; KEGG: csa:Csal_1053 IucA/IucC. (223 aa)    
Predicted Functional Partners:
Xcel_1800
PFAM: peptidase S45 penicillin amidase; KEGG: vei:Veis_1397 penicillin amidase.
    0.986
Xcel_1802
KEGG: csa:Csal_1054 L-lysine 6-monooxygenase (NADPH).
 
  
 0.976
Xcel_1803
PFAM: Pyridoxal-dependent decarboxylase; KEGG: csa:Csal_1055 pyridoxal-dependent decarboxylase.
 
  
 0.955
Xcel_1801
PFAM: IucA/IucC family protein; KEGG: csa:Csal_1053 IucA/IucC.
 
  
0.905
Xcel_1798
PFAM: filamentation induced by cAMP protein Fic; KEGG: acp:A2cp1_0593 filamentation induced by cAMP protein Fic.
       0.645
Xcel_1804
PFAM: protein of unknown function DUF1222; KEGG: protein of unknown function DUF1222.
       0.530
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.483
Xcel_1496
KEGG: gsu:GSU2383 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein.
  
  
 0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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