STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1802KEGG: csa:Csal_1054 L-lysine 6-monooxygenase (NADPH). (496 aa)    
Predicted Functional Partners:
Xcel_1801
PFAM: IucA/IucC family protein; KEGG: csa:Csal_1053 IucA/IucC.
  
 0.988
Xcel_1799
Hypothetical protein; KEGG: csa:Csal_1053 IucA/IucC.
 
  
 0.976
Xcel_1803
PFAM: Pyridoxal-dependent decarboxylase; KEGG: csa:Csal_1055 pyridoxal-dependent decarboxylase.
  
 0.963
Xcel_1800
PFAM: peptidase S45 penicillin amidase; KEGG: vei:Veis_1397 penicillin amidase.
 
  
 0.930
Xcel_1798
PFAM: filamentation induced by cAMP protein Fic; KEGG: acp:A2cp1_0593 filamentation induced by cAMP protein Fic.
       0.645
Xcel_1471
KEGG: ccs:CCNA_00319 acetyltransferase, GNAT family.
 
  
 0.578
Xcel_1804
PFAM: protein of unknown function DUF1222; KEGG: protein of unknown function DUF1222.
       0.530
Xcel_0035
PFAM: GCN5-related N-acetyltransferase; KEGG: ppf:Pput_3213 GCN5-related N- acetyltransferase.
  
  
 0.523
Xcel_0194
PFAM: GCN5-related N-acetyltransferase; KEGG: pae:PA1928 ribosomal protein alanine acetyltransferase.
  
  
 0.523
Xcel_1567
PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase protein.
  
  
 0.523
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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