STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1804PFAM: protein of unknown function DUF1222; KEGG: protein of unknown function DUF1222. (474 aa)    
Predicted Functional Partners:
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
 
      0.636
Xcel_1800
PFAM: peptidase S45 penicillin amidase; KEGG: vei:Veis_1397 penicillin amidase.
  
    0.538
Xcel_1799
Hypothetical protein; KEGG: csa:Csal_1053 IucA/IucC.
       0.530
Xcel_1801
PFAM: IucA/IucC family protein; KEGG: csa:Csal_1053 IucA/IucC.
       0.530
Xcel_1802
KEGG: csa:Csal_1054 L-lysine 6-monooxygenase (NADPH).
       0.530
Xcel_1803
PFAM: Pyridoxal-dependent decarboxylase; KEGG: csa:Csal_1055 pyridoxal-dependent decarboxylase.
       0.530
Xcel_2641
KEGG: mxa:MXAN_5221 hypothetical protein.
 
     0.486
Xcel_1798
PFAM: filamentation induced by cAMP protein Fic; KEGG: acp:A2cp1_0593 filamentation induced by cAMP protein Fic.
       0.476
Xcel_0214
KEGG: ade:Adeh_0229 FAD dependent oxidoreductase.
 
     0.436
Xcel_1605
Hypothetical protein.
  
     0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.