STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1806PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: aav:Aave_3979 ABC transporter-related protein. (650 aa)    
Predicted Functional Partners:
Xcel_0101
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL80063 putative ATP-binding component of ABC transporter.
 
     
0.876
Xcel_1805
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: afr:AFE_0617 ABC transporter, permease/ATP- binding protein.
 
    
0.821
Xcel_2269
KEGG: acr:Acry_1637 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
   
0.622
Xcel_1807
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: aba:Acid345_4201 HNH endonuclease.
       0.554
Xcel_2822
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_3444 ABC transporter related.
 
    
0.532
Xcel_0221
Hypothetical protein; KEGG: afw:Anae109_0175 integral membrane protein- like protein.
  
     0.480
Xcel_0140
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swd:Swoo_1852 hypothetical protein.
  
     0.443
Xcel_0382
KEGG: hypothetical protein.
  
     0.401
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.