STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1834Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mpt:Mpe_A2658 AraC family transcriptional regulator. (328 aa)    
Predicted Functional Partners:
Xcel_3197
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1981 LuxR superfamily regulatory protein.
  
     0.635
Xcel_0148
TIGRFAM: conserved repeat domain protein; KEGG: bcr:BCAH187_A3696 conserved repeat domain protein.
  
     0.598
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.586
Xcel_1835
PFAM: major facilitator superfamily MFS_1; KEGG: tbd:Tbd_1524 major facilitator transporter.
  
  
 0.578
Xcel_1842
KEGG: aeh:Mlg_0741 hypothetical protein.
  
     0.571
Xcel_3123
KEGG: bbt:BBta_3059 hypothetical protein.
  
     0.520
Xcel_2589
PFAM: LicD family protein; KEGG: hsm:HSM_1173 LicD family protein.
  
     0.502
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
  
     0.474
Xcel_1590
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
  
   0.471
Xcel_3051
KEGG: hypothetical protein.
  
     0.456
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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