STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1859PFAM: periplasmic solute binding protein; KEGG: bha:BH2760 hypothetical protein. (362 aa)    
Predicted Functional Partners:
Xcel_2170
PFAM: ABC-3 protein; KEGG: gbm:Gbem_3532 ABC-3 protein.
 
 
 0.991
Xcel_2169
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3153 hypothetical protein.
 
 
 0.985
Xcel_2168
PFAM: periplasmic solute binding protein; KEGG: rce:RC1_3161 high-affinity zinc uptake system protein ZnuA.
  
  
 
0.902
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.573
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aba:Acid345_0165 LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.559
Xcel_1860
KEGG: pca:Pcar_2682 hypothetical protein.
       0.535
Xcel_1858
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dvu:DVU2148 CBS/transporter associated domain- containing protein.
       0.451
Xcel_1861
PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase.
       0.438
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.