STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1878KEGG: sme:SMa0044 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Xcel_1674
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: afw:Anae109_4038 ATP-dependent DNA ligase.
  
     0.620
Xcel_1879
Hypothetical protein.
       0.577
Xcel_1866
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: cti:RALTA_B1837 conserved hypothetical protein, DUF704.
 
     0.476
Xcel_0359
KEGG: abo:ABO_1591 alpha/beta fold family hydrolase.
 
     0.456
Xcel_1389
PFAM: NUDIX hydrolase; globin; KEGG: bra:BRADO6916 putative NUDIX family protein.
 
     0.452
Xcel_1675
TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: afw:Anae109_2830 DNA primase small subunit.
  
     0.430
Xcel_0245
Hypothetical protein; KEGG: bam:Bamb_4945 periplasmic sensor signal transduction histidine kinase.
  
     0.418
Xcel_1461
Hypothetical protein; KEGG: xca:xccb100_2257 sensory box histidine kinase, probable.
  
     0.408
Xcel_2197
KEGG: scl:sce8934 hypothetical protein.
  
     0.405
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.