STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1905PFAM: ABC-2 type transporter; KEGG: bca:BCE_5484 ABC transporter, permease protein, putative. (255 aa)    
Predicted Functional Partners:
Xcel_1906
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smt:Smal_0255 ABC transporter related.
    0.961
Xcel_1907
KEGG: ank:AnaeK_3199 transcriptional regulator, TetR family.
       0.570
Xcel_0762
Hypothetical protein; KEGG: bcj:BCAL0196 major facilitator superfamily protein.
  
     0.468
Xcel_0761
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_03389 lantibiotic transport ATP- binding protein.
 
    0.431
Xcel_0965
PFAM: VanW family protein; Fimbrial assembly family protein; KEGG: bcr:BCAH187_A0731 hypothetical protein.
 
    0.431
Xcel_0127
Hypothetical protein; KEGG: rsq:Rsph17025_2323 phosphate transporter.
  
     0.430
Xcel_0417
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbp:Sbal223_2832 ABC transporter related.
    0.423
Xcel_1908
KEGG: ade:Adeh_3100 hypothetical protein.
       0.419
Xcel_0879
PFAM: VanW family protein; KEGG: scl:sce7395 putative secreted protein.
 
    0.408
Xcel_2891
PFAM: nitroreductase; KEGG: rle:pRL120186 hypothetical protein.
 
    0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.