STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1912PFAM: band 7 protein; SMART: band 7 protein; KEGG: bcy:Bcer98_0488 flotillin domain-containing protein. (492 aa)    
Predicted Functional Partners:
Xcel_1428
PFAM: protein of unknown function DUF107; KEGG: mxa:MXAN_3983 NfeD family protein.
  
  
 0.753
Xcel_1913
Hypothetical protein.
       0.620
Xcel_2934
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: scl:sce5472 chloroplast membrane-associated 30 kD protein.
  
  
 0.606
Xcel_1911
PFAM: protein of unknown function DUF88; KEGG: pol:Bpro_1435 hypothetical protein.
       0.523
Xcel_1914
PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sus:Acid_5841 23S rRNA (uracil-5-)- methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.468
Xcel_1429
PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfu:Sfum_2310 band 7 protein.
     
 0.465
Xcel_1974
PFAM: band 7 protein; SMART: band 7 protein; KEGG: sml:Smlt1263 putative transmembrane protein.
     
 0.443
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.